[BioC] affylmGUI

[Keith Satterley]

Hi Anke,

could you give me the output from the sessionInfo() command and also a copy of 
the targets file that you are using. I'm just downloading the CEL files and 
since it's about 11pm here I'll check them tomorrow,

cheers,

========================
Keith Satterley
Bioinformatics Division
The Walter and Eliza Hall Institute of Medical Research
Parkville, Melbourne,
Victoria, Australia
=======================

Anke Wendschlag wrote:
> Hi bioconductors,
> 
> I have installed affylmGUI with all packages in R.
> 
> I have the R version 2.5.0 and I took your examples for testing affylmGUI!
> 
> The first error advice is 
> 
>             Error in data.frame(sample = 1:length(sampleNames), row.names =
> sampleNames):dopplete row.names:  (by using malaria data)
> 
> And after that
> 
>             Error in assign("RawAffyData",
> RawAffyData,affylmGUIenvironment):objekt "RawAffyData" nicht gefunden   (by
> using malaria data)
> 
> And than
> 
>             Error in colnames(RawAffyData at exprs):error in evaluating the
> argument 'x' in selecting a method for          
> 
> function 'colnames'
> (by using malaria and estrogen datas)
> . 
> 
> These error advices are till by opening the target text file.
> 
> Malaria datas makes a lot of trouble: 
> 
> for example
> 
>             Error in function(classes,fdef,mtable) : unable to find
> inherited method for function "probeNames", for 
> 
> signature "numeric"
> 
> Error in
> assign("NormalizedAffyData",NormalizedAffyData,affylmGUIenvironment): objekt
> "NormalizedAffyData" nicht
> 
> gefunden
> 
> I hop you can help me!
> 
> Best wishes,
> 
> Anke
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> 
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