[BioC] GOstats After Running Lumi
Seth Falcon
sfalcon at fhcrc.org
Fri May 4 05:22:41 CEST 2007
"James W. MacDonald" <jmacdon at med.umich.edu> writes:
> First off, you are missing the universeGeneIds. I don't know what
> hyperGTest will do in that situation, but it can't be as good as
> actually specifying one.
If left unspecified, all genes probed on the chip are used as the
universe. I fully agree that this is in most cases a suboptimal
choice.
+ seth
--
Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center
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