[BioC] Problems installing BioC, zlib.h

[Markus Schmidberger]

Thanks, thats it!

zlib1g-dev was missing

Markus


Laurent Gatto schrieb:
> Hi Markus,
>
> I think that you need to install 
> - zlib1g (compression library - runtime) and 
> - zlib1g-dev (compression library - development).
>
> Laurent
>
> --
> Laurent Gatto
> DNAVision SA
>
>
> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch on behalf of Markus Schmidberger
> Sent: Tue 26/06/2007 18:10
> To: bioconductor at stat.math.ethz.ch
> Subject: [BioC] Problems installing BioC, zlib.h
>  
> Hello,
>
> we have installed R-2.5.0 at a Debian 4.0
> ./configure --with-x=no && make && make checks && make install
>
> There are no problems and R is running very well.
>  >sessionInfo()
> R version 2.5.0 (2007-04-23)
> i686-pc-linux-gnu
> locale:
> LC_CTYPE=de_DE.UTF-8;LC_NUMERIC=C;LC_TIME=de_DE.UTF-8;LC_COLLATE=de_DE.UTF-8;LC_MONETARY=de_DE.UTF-8;LC_MESSAGES=de_DE.UTF-8;LC_PAPER=de_DE.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=de_DE.UTF-8;LC_IDENTIFICATION=C 
>
> attached base packages:
> [1] "stats"     "graphics"  "grDevices" "utils"     "datasets"  "methods"
> [7] "base"
>
> But when we install Bioconductor or only the library(affyio) we get the 
> error:
> ==================================================
> downloaded 57Kb
> * Installing *source* package 'affyio' ...
> creating cache ./config.cache
> checking how to run the C preprocessor... cc -E
> checking for main in -lz... no
> updating cache ./config.cache
> creating ./config.status
> creating src/Makevars
> ** libs
> gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include  
> -I/usr/local/include    -fpic  -g -O2 -c read_abatch.c -o read_abatch.o
> read_abatch.c:153:18: error: zlib.h: Datei oder Verzeichnis nicht gefunden
> read_abatch.c:1246: error: expected declaration specifiers or â...â 
> before âgzFileâ
> read_abatch.c: In function âReadgzFileLineâ:
> read_abatch.c:1247: warning: implicit declaration of function âgzgetsâ
> read_abatch.c:1247: error: âcurrentFileâ undeclared (first use in this 
> function)
> read_abatch.c:1247: error: (Each undeclared identifier is reported only 
> once
>
> I think that there is missing a zlib library, but zlib-bin and zlibc are 
> installed.
> What is wrong?
>
> Thanks a lot
> Markus
>
>   


-- 
Dipl.-Tech. Math. Markus Schmidberger

Ludwig-Maximilians-Universität München
IBE - Institut für medizinische Informationsverarbeitung,
Biometrie und Epidemiologie
Marchioninistr. 15, D-81377 Muenchen
URL: http://ibe.web.med.uni-muenchen.de 
Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de
Tel: +49 (089) 7095 - 4599