[BioC] question regarding ncbi gene2accession and annbuilder
Nianhua Li
nialicn at yahoo.com
Fri Jun 22 21:30:03 CEST 2007
Hi, Mark,
AnnBuilder retrieves chromosome location data from UCSC Genome Browser. You
can query UCSC Genome Browser directly or download data from
http://hgdownload.cse.ucsc.edu/downloads.html
biomart (BioMart and biomaRt) queries data from Ensembl (along with other
databases). There are some collaborations between Ensembl and UCSC. I am sure
others on the list can help you out on this part.
best
nianhua
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