[BioC] Another lumi question (sample info)

[Michal Blazejczyk]

Hi,

I have another question regarding lumi.  Function lumiR() parses
column headers in the file to retrieve sample and label information.
the result is stored in an AnnotatedDataFrame object.  My question
is the following: is this information used in calculations in lumi?
That is, will I get different results depending on how my samples
are organized, and in what circumstances?

Best,
Michal Blazejczyk