[BioC] se.exprs extractor question
Kellie J. Archer, Ph.D.
kjarcher at vcu.edu
Wed Jun 20 16:51:43 CEST 2007
I am wanting to directly use the p-values estimated from mas5calls, and
following the example,
> data(affybatch.example)
> PACalls <- mas5calls(affybatch.example)
Getting probe level data...
Computing p-values
Making P/M/A Calls
> se.exprs(PACalls)[1:10,]
Error in function (classes, fdef, mtable) :
unable to find an inherited method for function "se.exprs", for
signature "ExpressionSet"
In previous releases the p-values were stored in se.exprs, and the help
still indicates that is the case. Does anyone know how they can be
extracted?
> sessionInfo()
R version 2.5.0 (2007-04-23)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] "tools" "stats" "graphics" "grDevices" "utils" "datasets"
[7] "methods" "base"
other attached packages:
affy affyio Biobase
"1.14.1" "1.4.0" "1.14.0"
-Kellie Archer
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