[BioC] Biomart with human genes NCBI 35

[Durinck, Steffen (NIH/NCI) [F]]

Dear Marco,

Selecting archived versions is currently only possible using biomaRt in MySQL mode and will become available soon in web service mode.

To see the available archives do:

listMarts(mysql=TRUE, archive=TRUE)

To connect to a previous version (e.g. Ensembl 44) you have to do:

ensembl = useMart("ensembl_mart_44",dataset="hsapiens_gene_ensembl",mysql=TRUE,archive=TRUE)

Use the listDatasets function to see the NCBI version, you'll have to go back to Ensembl 37 to get the NCBI35 build.

Cheers,
Steffen

-----Original Message-----
From: marco zucchelli [mailto:marco.bioc at gmail.com]
Sent: Tue 6/19/2007 7:12 AM
To: bioconductor
Subject: [BioC] Biomart with human genes NCBI 35
 
Dear All,

 is it possible to select within biomart other builds for human genes rather
than the current
NCBI36 ?
I would like to get  gene positions according to  NCBI35  but seems that
there is no way to
do that

Regards

Marco

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