[BioC] AnnotationDbi package only available for R 2.6.0 or higher version?

Daofeng Li lidaof at gmail.com
Fri Jun 15 05:35:50 CEST 2007


hi list,

i want to make an annotation package for Medicago.
i searched the mailing list and found AnnBuilder maybe help me solve this
i found in the ABPrimer.pdf from bioconductor.org mentions
AnnotationDbi as a attached package.i am wondering AnnotationDbi will
as a requriement for AnnBuilder.
so i use biocLite to install AnnBuilder,RSQLite,DBI,AnnotationDbi one by one
the first 3 without problem
but AnnotationDbi failed
this is the wrong message and sessioninfo:
> biocLite("AnnotationDbi")
Running biocinstall version 2.0.8 with R version 2.5.0
Your version of R requires version 2.0 of Bioconductor.
Warning message:
package 'AnnotationDbi' is not available in: install.packages(pkgs =
pkgs, repos = repos, dependencies = dependencies,
> sessionInfo()
R version 2.5.0 (2007-04-23)
i686-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "methods"   "base"

other attached packages:
AnnBuilder   annotate        XML    Biobase
  "1.14.0"   "1.14.1"    "1.9-0"   "1.14.0"
> library(RSQLite)
Loading required package: DBI
> sessionInfo()
R version 2.5.0 (2007-04-23)
i686-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "methods"   "base"

other attached packages:
   RSQLite        DBI AnnBuilder   annotate        XML    Biobase
   "0.5-4"    "0.2-3"   "1.14.0"   "1.14.1"    "1.9-0"   "1.14.0"

Thanks for any response!

Best!
-- 
Daofeng Li,PhD Candidate
China Agricultural University



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