[BioC] Affy Human Gene ST1.0 cdf

[rcaloger]

"Anthony Bosco" wrote:
>Hi,
>Is anyone currently working on annotation and cdf packages for the
>Affymetrix Human Gene ST1.0 microarrays. 

I have generated a cdf file for Human Gene ST 1.0 (hugene10stv1cdf) using the :
window version: http://www.bioinformatica.unito.it/downloads/hugene10stv1cdf_1.0.0.zip
Unix version:  http://www.bioinformatica.unito.it/downloads/hugene10stv1cdf_1.0.0.tar.gz

It was generated with the following code:
library(affy)
library(makecdfenv)
tmp <- read.celfile("TisMap_Brain_01_v1_WTGene1.CEL")
pname <- cleancdfname(tmp$HEADER$cdfName)

make.cdf.package("HuGene-1_0-st-v1.r3.cdf",
       packagename  = pname,
       version      = "1.0.0",
       author       = "Raffaele A. Calogero",
       maintainer   = "Raffaele A. Calogero <raffaele.calogero at unito.it>",
       species      = "Homo_sapiens",
       compress     = TRUE,
       verbose      = TRUE)
 #R CMD -build  hugene10stv1cdf 

Cheers
Raffaele


 

----------------------------------------
Prof. Raffaele A. Calogero
Bioinformatics and Genomics Unit
Dipartimento di Scienze Cliniche e Biologiche
c/o Az. Ospedaliera S. Luigi
Regione Gonzole 10, Orbassano
10043 Torino
tel.   ++39 0116705417
Lab.   ++39 0116705408
Fax    ++39 0119038639
Mobile ++39 3333827080
email: raffaele.calogero at unito.it
       raffaele[dot]calogero[at]gmail[dot]com
www:   www.bioinformatica.unito.it