[BioC] error in QC report

[James W. MacDonald]

Hi Mayte,

Mayte Suarez-Farinas wrote:
> Hi,
> 
> I am working with plain hgu133a2 chips and I got an error in QCReport:
> 
> 
> plot(qc(abatch))
> Error in get("spikes", envir = .qcEnv) : object ".qcEnv" not found
> 
> 
> I tried the approach suggested by James McDonald to Sanchita
> but, still it doesn't found the qcEnv, see below
> 
> library(simpleaffy)
>  >  df1 <- get("alpha", .qcEnv)
> Error in get("alpha", .qcEnv) : object ".qcEnv" not found
> 
> 
> any help will be appreciated,
> 
> Mayte
> 
> ps. I am working with the last R+BioC version in MAC Intel desktop.

An actual sessionInfo() would be more informative here.

It is always possible that you have a busted simpleaffy package. Have 
you tried re-installing using biocLite() and seeing if that fixes things?

Best,

Jim


> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor


-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623


**********************************************************
Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.