[BioC] 'recursive default argument' error in GOENTREZID2GO

[James W. MacDonald]

Hi Oleg,

Oleg Sklyar wrote:
> Hi,
> 
> anybody has an idea as for the following error, the example is actually 
> from the GO package examples. Thanks, Oleg
> 
>  > library(GO)
>  > egId <- "10043"
>  > egIdGoData <- GOENTREZID2GO[[egId]]
> Error: recursive default argument reference

I sometimes see that error as well. I have no idea what causes it, as it 
doesn't seem repeatable. Anyway, quitting R and starting over has always 
fixed the problem for me.

Best,

Jim


>  > sessionInfo()
> R version 2.5.0 (2007-04-23)
> x86_64-unknown-linux-gnu
> 
> locale:
> LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C
> 
> attached base packages:
> [1] "splines"   "tools"     "stats"     "graphics"  "grDevices" "utils"
> [7] "datasets"  "methods"   "base"
> 
> other attached packages:
>     Category      Matrix     lattice  genefilter    survival    annotate
>      "2.2.1" "0.9975-11"    "0.15-4"    "1.14.1"      "2.31"    "1.14.1"
>         KEGG       graph     Biobase          GO     biomaRt       RCurl
>     "1.16.0"    "1.14.0"    "1.14.0"    "1.16.0"    "1.10.0"     "0.8-0"
>          XML
>      "1.9-0"
> 


-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623


**********************************************************
Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues.