[BioC] cateGOry error

[Oleg Sklyar]

Hi,

I am having troubles with cateGOry as follows:

 > m <- cateGOry(go$refseq_dna, go$go, FALSE)
Error in augmentByAncestors(ux) : GO terms 24, 172, 1978, 1979, 4442 
were mentioned in 'x' but were not found in the GO package.

what this error means was not clear, so I tried those as indexes in my 
data, as follows first, or as GO ids as follows second. Neither worked. 
Any idea? Thanks, Oleg

 > index <- c(24, 172, 1978, 1979, 4441)
 > m <- cateGOry(go$refseq_dna[-index], go$go[-index], FALSE)
Error in augmentByAncestors(ux) : GO terms 24, 172, 1978, 1979, 4442 
were mentioned in 'x' but were not found in the GO package.

 > terms <- c("GO:0000024", "GO:0000172", "GO:0001978", "GO:0001979", 
"GO:0004442")
 > index <- which(go$go %in% terms)
 > go$go[index]
[1] "GO:0000172" "GO:0000172"

 > m <- cateGOry(go$refseq_dna[-index], go$go[-index], FALSE)
Error in augmentByAncestors(ux) : GO terms 24, 172, 1978, 1979, 4441 
were mentioned in 'x' but were not found in the GO package.

-- 
Dr Oleg Sklyar | EBI-EMBL, Cambridge CB10 1SD, UK | +44-1223-494466