[BioC] problem with GDS2eSet in GEOquery package

[Sean Davis]

Sergii Ivakhno wrote:
> Dear Biocondcutor users 
> Can someone help me with the following problem?
> I use GEO query to fetch a GDS record from GEO and then I use GDS2eSet to export it into exppressionset. According to the source code GDS2eSet also retrieves GPL record   
>     if(is.null(GPL)) {
>       GPL <- getGEO(Meta(GDS)$platform)
>     }
>
> When the GPL is downloaded I get the following error:
> File stored at:
> /tmp/RtmpMbEluC/GPL570.soft
> Error in validObject(.Object) : invalid class "AnnotatedDataFrame" object:
>   AnnotatedDataFrame colnames of data differ from row.names of varMetadata
> Execution halted
>
> Interestingly, but I do not get this error on Windows (only linux)
> Thanks a lot in advance.
>   
Hi, Sergii.  Could you let me know what version you are using by giving 
sessionInfo()? 

Thanks,
Sean