[BioC] Annotations dealing with "removed" refseq record

[Sean Davis]

nli at fhcrc.org wrote:
> Hi, Francois,
>
> If I remember correctly, we had a hard time finding up-to-date annotations from
> Agilent. The annotation file we downloaded from Agilent was out-of-date. We
> still update the annotation packages for each release, but probeset to gene
> mapping (recorded in mgug4122aACCNUM) hasn't been updated for quite a long
> time. In another word, we only update the annotations for the genes. So, if
> mgug4122aACCNUM is wrong/deprecated for a probeset, then other annotations for
> this probeset will be incorrect.
>
> Could you please post the link to the up-to-date annotation file? We can
> re-build the annotation packages base on them. Your help will be highly
> appreciated.
>   
I think this is it, but they are still pretty old (many from fall, 2006):

http://www.chem.agilent.com/cag/bsp/gene_lists.asp?arrayType=gene

Sean