[BioC] mas5calls with make.cdf.env

[James W. MacDonald]

Hi Lana,

Lana Schaffer wrote:
> Hi James,
> R version 2.5.0 (2007-04-23)
> makecdfenv   "1.14.0"
> I am following the vignette for makecdfenv to create a new
> cdfenv and can use this env for functions llike plotHist
> but I get an error when using the function mas5calls.
> Error: 
> Getting probe level data...
> Computing p-values
> Error in FUN(1:6[[1L]], ...) : NA/NaN/Inf in foreign function call (arg
> 2)
> This is my code:
> mycdfenv <- make.cdf.env("myname.CDF")
> abatch <- ReadAffy()
> abatch at cdfName <- "mycdfenv"
> Calls <-mas5calls(abatch)
> -Error-
> Can someone help me get the mas5calls function to work here?

How about giving us a sessionInfo() and a traceback() after the error.

Best,

Jim


> Thanks,
> 
> Lana Schaffer
> Biostatistics/Informatics
> The Scripps Research Institute
> DNA Array Core Facility
> La Jolla, CA 92037
> (858) 784-2263
> (858) 784-2994
> schaffer at scripps.edu
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623


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