[BioC] crlmm error: cluster centres

Benilton Carvalho bcarvalh at jhsph.edu
Wed Jun 6 00:55:05 CEST 2007


add the gender associated to the 2 samples in the phenoData slot of  
hindDataRMA and this problem will be taken care of.

b

On Jun 5, 2007, at 6:50 PM, Beth Wilmot wrote:

> Hello,
>
> I am running R-2.5; Bioconductor 2.0 and oligo 1.0.2-3.
>
> I have created a SNPQset but am unable to get the genotypes from
> crlmm:
>
>> hindcrlmm = crlmm(hindDataRMA,correctionFile ="correctionHind.rda")
> M correction not provided. Calculating. Will take several minutes.
> Error: number of cluster centres must lie between 1 and nrow(x)
>
> This is a test set of 2 chips.
>
>
> Thanks for your help,
> Beth
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/ 
> gmane.science.biology.informatics.conductor



More information about the Bioconductor mailing list