[BioC] OntoCompare Error

[Robert Gentleman]

try another package for GO testing?

and setting options(error=recover)
will put you into the debugger from where you might be able to figure 
out what went wrong, and at least it will give you (and us) some ideas. 
Also, please read the posting guide and provide the information it tells 
you is needed (and indeed is needed) for someone to be able to help you



Johannes Graumann wrote:
> Hello,
> 
> With the help of this list I succeeded in creating an annotation package
> using ABPkgBuilder/AnnBuilder ("Mus.musculus.GoMap.20070223"), which
> installs fine.
> I then tried to run goTools' ontoCompare function like this:
> 
> result <- ontoCompare(ProtNames, probeType = "Mus.musculus.GoMap.20070223")
> 
> After a LONG time, it stops with the following:
>         Error in as.vector(x, mode) : invalid argument 'mode' error
> 
> Does anyone spot what I'm doing wrong?
> 
> Thanks, Joh
> 
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-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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PO Box 19024
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206-667-7700
rgentlem at fhcrc.org