[BioC] ABPkgBuilder trouble

[Nianhua Li]

Hi Johan,

I created a package by using your script and the probe-GenBank mapping 
(5 lines)showed in your email. It looks fine:

Quality control information for  Hum30kbatch1to5
Date built: Created: Tue Feb 20 17:43:09 2007

Number of probes: 5
Probe number missmatch: None
Probe missmatch: None
Mappings found for probe based rda files:
         Hum30kbatch1to5ACCNUM found 5 of 5
         Hum30kbatch1to5CHRLOC found 4 of 5
         Hum30kbatch1to5CHR found 4 of 5
         Hum30kbatch1to5ENTREZID found 4 of 5
         Hum30kbatch1to5ENZYME found 2 of 5
         Hum30kbatch1to5GENENAME found 4 of 5
         Hum30kbatch1to5GO found 4 of 5
         ...

I am using R 2.5 though (sessionInfo below). GO 1.51.1 and GO 1.14.1 are 
the same. AnnBuilder 1.12.0  should work well on R 2.4. And your script 
is fine. Maybe it is environment setting or network problem?

hope this is helpful

nianhua

sessionInfo()
R version 2.5.0 Under development (unstable) (2007-01-22 r40546)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US;LC_NUMERIC=C;LC_TIME=en_US;LC_COLLATE=en_US;
LC_MONETARY=en_US;LC_MESSAGES=en_US;LC_PAPER=en_US;LC_NAME=C;
LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US;LC_IDENTIFICATION=C

attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "utils"     "datasets"
[7] "methods"   "base"

other attached packages:
        GO AnnBuilder   annotate        XML    Biobase
  "1.15.1"  "1.13.14"   "1.13.4"    "1.4-0"  "1.13.34"