[BioC] read.maimages broken (limma 2.9.10)?

[Gordon K Smyth]

Dear Koen,

This bug was introduced last week in limma 2.9.10 with an attempted cleanup
of the read.maimages() function.  I've committed a fix in limma 2.9.11.

Best wishes
Gordon

>[BioC] read.maimages broken (limma 2.9.10)?
>Koen Bossers k.bossers at nin.knaw.nl
>Fri Feb 16 12:20:57 CET 2007
>
>Hi,
>
>I seem to be unable to read in Agilent data with the latest LIMMA version
>(2.9.10). This happened with fresh installations of R (2.4.1 and 2.5.0)
>and bioconductor (via biocLite) on both Windows and Linux. Is there any
>way around this?
>
>Cheers, Koen
>
>
>> RG <- read.maimages(targets$FileName,source="agilent")
>Error in read.table(file = file, header = TRUE, col.names = allcnames,  :
>        formal argument "header" matched by multiple actual arguments
>
>
>> sessionInfo()
>R version 2.5.0 Under development (unstable) (2007-02-15 r40732)
>i686-pc-linux-gnu
>
>locale:
>LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
>attached base packages:
>[1] "stats"     "graphics"  "grDevices" "utils"     "datasets"  "methods"
>[7] "base"
>
>other attached packages:
>   limma
>"2.9.10"
>
>
>--
>Koen Bossers, PhD student
>Netherlands Institute of Neurosciences
>(formerly Netherlands Institute for Brain Research)
>Meibergdreef 33
>1105 AZ Amsterdam, The Netherlands
>Phone: +31-20-5665512
>Email: k.bossers at nin.knaw.nl
>