[BioC] snapCGH - subscript out of bounds

[J-C. Marioni]

Hi Joao,

Assuming that a and b refer to the Cy3 and Cy5 channels respectively, 
then I think using the design 1 1 1 -1 -1 -1 should work. The design 
component in snapCGH is only for stating whether the test sample is in the 
Cy3 (-1) or Cy5 (1) channel respectively.

Hope this helps,
John


On Wed, 7 Feb 2007, João Fadista wrote:

> Dear all,
>
> I was trying to use the function processCGH from the snapCGH package with my MAList but it gave me this error:
> "Error: subscript out of bounds".
> Then, I changed my design and now it appears to be working. But this is a wrong design for my MAList.
>
> Right design that didn´t worked:
>      a  b
> 1    0  -1
> 2    0  -1
> 3    0  -1
> 4   -1   0
> 5   -1   0
> 6   -1   0
>
> Wrong design that worked:
> 1 1 1 1 1 1
>
> Thanks in advance
>
> Med venlig hilsen / Regards
>
> João Fadista
> Ph.d. studerende / Ph.d. student
>
>
>
> 	 AARHUS UNIVERSITET / UNIVERSITY OF AARHUS
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