[BioC] GEOquery and different GPL: handle of GSE
sdavis2 at mail.nih.gov
Thu Feb 8 03:28:21 CET 2007
claudio.is at libero.it wrote:
> Dear BioC,
> I'm downloading a dataset from NCBI GEO with GEOquery, in particular GSE3654, which is composed by different GPL platforms; according to the vignette I have to split the dataset according to the GPLs, but I found I was not able to handle the GSE classes and sub-index it. Can you help me?
I'm glad to hear you have gotten the data downloaded and into a GSE
object. In what column of the GSM tables are you interested? Also,
what have you tried? I can comment more fully with that information.
More information about the Bioconductor