[BioC] GEOquery and different GPL: handle of GSE

Sean Davis sdavis2 at mail.nih.gov
Thu Feb 8 03:28:21 CET 2007

claudio.is at libero.it wrote:
> Dear BioC,
> I'm downloading a dataset from NCBI GEO with GEOquery, in particular GSE3654, which is composed by different GPL platforms; according to the vignette I have to split the dataset according to the GPLs, but I found I was not able to handle the GSE classes and sub-index it. Can you help me?

I'm glad to hear you have gotten the data downloaded and into a GSE 
object.  In what column of the GSM tables are you interested?  Also, 
what have you tried?  I can comment more fully with that information.


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