[BioC] AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)

Emmanuel Levy emmanuel.levy at gmail.com
Tue Feb 6 17:09:03 CET 2007


Hello,

I have an error with affyQCReport:
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about
chip type: celeganscdf
Error in plot(qc(object)) : unable to find the argument 'x' in
selecting a method for function 'plot'

The reason is that the package of the chip I use (celegans) is not
found in .qcEnv

Do you know why it is not added when I load the celeganscdf library?
Shall I add it myself? If yes could you please let me know how?

Thanks in advance,

Emmanuel

> sessionInfo()
R version 2.2.1, 2005-12-20, x86_64-redhat-linux-gnu

attached base packages:
[1] "splines"   "tools"     "methods"   "stats"     "graphics"  "grDevices"
[7] "utils"     "datasets"  "base"

other attached packages:
 celeganscdf affyQCReport   simpleaffy   genefilter     survival   reposTools
    "1.10.0"      "1.8.0"      "2.4.2"      "1.8.0"       "2.20"      "1.8.0"
        affy      Biobase
     "1.8.1"      "1.8.0"



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