[BioC] AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
Emmanuel Levy
emmanuel.levy at gmail.com
Tue Feb 6 17:09:03 CET 2007
Hello,
I have an error with affyQCReport:
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about
chip type: celeganscdf
Error in plot(qc(object)) : unable to find the argument 'x' in
selecting a method for function 'plot'
The reason is that the package of the chip I use (celegans) is not
found in .qcEnv
Do you know why it is not added when I load the celeganscdf library?
Shall I add it myself? If yes could you please let me know how?
Thanks in advance,
Emmanuel
> sessionInfo()
R version 2.2.1, 2005-12-20, x86_64-redhat-linux-gnu
attached base packages:
[1] "splines" "tools" "methods" "stats" "graphics" "grDevices"
[7] "utils" "datasets" "base"
other attached packages:
celeganscdf affyQCReport simpleaffy genefilter survival reposTools
"1.10.0" "1.8.0" "2.4.2" "1.8.0" "2.20" "1.8.0"
affy Biobase
"1.8.1" "1.8.0"
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