[BioC] Rgraphviz: Edge attributes not displaying
Kasper Daniel Hansen
khansen at stat.Berkeley.EDU
Fri Feb 2 01:02:09 CET 2007
I can confirm the problem. I'll have a look at the source code today
or (more likely) tomorrow.
On Feb 1, 2007, at 11:36 AM, Jarrett Byrnes wrote:
> Hey, all. I'm working on some methods with Rgraphviz to plot sem
> objects (structrual equation models from the sem library) and have
> run into a problem. It would seem that Rgraphviz is not dealing with
> edge properties correctly. I've tried the following sample code:
> V <- letters[1:10]
> M <- 1:4
> g1 <- randomGraph(V, M, 0.2)
> nAttrs <- list()
> eAttrs <- list()
> z <- strsplit(packageDescription("Rgraphviz")$Description, " ")[]
> z <- z[1:numNodes(g1)]
> names(z) = nodes(g1)
> nAttrs$label <- z
> eAttrs$label <- c("a~h" = "Label 1", "c~h" = "Label 2")
> attrs <- list(node = list(shape = "ellipse", fixedsize = FALSE))
> plot(g1, nodeAttrs = nAttrs, edgeAttrs = eAttrs, attrs = attrs)
> And instead of labeling the edges, they become more angled/straight
> and less curved. I've had similar problems with my own functions
> that I'm coding. Similarly, when I specify "solid" or "dashed"
> nothing happens. I'd be happy to send a picture, if you would like.
> Although making solid or dashed a label instead of a style tends to
> again straighten the edges.
> FYI, I'm running R 2.4.1 and Rgraphviz 1.12.3 (the most current) and
> the proper version of xgvis that's needed to install this version of
> Rgraphviz. All of this is on a mac running OSX 10.4.8.
> Any clue why this might be happening/is there a fix?
> Jarrett Byrnes
> Population Biology Graduate Group, UC Davis
> Bodega Marine Lab
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