[BioC] data set 'yeastCC' not found in: data(yeastCC)

[Glazko, Galina]

James,

Thank you! It works now.

Best regards
Galina

-----Original Message-----
From: James W. MacDonald [mailto:jmacdon at med.umich.edu] 
Sent: Wednesday, September 27, 2006 11:05 AM
To: Glazko, Galina
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] data set 'yeastCC' not found in: data(yeastCC)

Hi Galina,

Glazko, Galina wrote:
> Dear list,
> 
>  
> 
> I was trying to use yeastCC package:
> 
> It was installed successfully
> 
>
------------------------------------------------------------------------
> ----------------
> 
> 
>>source("http://bioconductor.org/biocLite.R")
> 
> 
>>biocLite('yeastCC')
> 
> 
> Running getBioC version 0.1.8 with R version 2.3.1 
> 
> Running biocinstall version 1.8.5 with R version 2.3.1 
> 
> Your version of R requires version 1.8 of Bioconductor.
> 
> trying URL
>
'http://bioconductor.org/packages/1.8/data/experiment/bin/windows/contri
> b/2.3/yeastCC_1.0.0.zip'
> 
> Content type 'application/zip' length 2635164 bytes
> 
> opened URL
> 
> downloaded 2573Kb
> 
> package 'yeastCC' successfully unpacked and MD5 sums checked
> 
>
------------------------------------------------------------------------
> ----------------
> 
>  
> 
> But after that I got an error message:
> 
> 
>>data(yeastCC)
> 
> 
> Warning message:
> 
> data set 'yeastCC' not found in: data(yeastCC)
> 
>  
> 
> 
>>library(yeastCC)
> 
> 
> Error in readChar(con, 5) : cannot open the connection
> 
> In addition: Warning message:
> 
> cannot open compressed file
> 'C:/PROGRA~1/R/R-23~1.1/library/yeastCC/data/yeastCC.rda' 
> 
> Error in library("yeastCC") : .First.lib failed for 'yeastCC'
> 
>  
> 
> Could someone please explain how it can be corrected?

The quick fix for you is to go into 
C:/PROGRA~1/R/R-23~1.1/library/yeastCC/data and unzip the Rdata.zip file

you will find there. Then the package will work as intended.

HTH,

Jim


> 
>  
> 
> Thank you!
> 
> Best regards
> 
> Galina 
> 
> 
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623


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