[BioC] topTable gene list

[Giovanni Coppola]

Hi Daphne,
perhaps ?write.fit does what you want.
Best
Giovanni

On Sep 13, 2006, at 7:13 AM, daphne mouzaki ((RI)) wrote:

> hi,
>
> I have generated a list of significant genes for 3 time points
> separately using the function
> "decideTests"in Limma package.Using this function I generated
> foldchanges and FDR for every
> gene using method Benjamini and Hochberg ("BH") and p.value=0.05.
> I was wondering if it is possible to generate all the FDR and
> foldchanges with the respective
> gene name for every time point.
> I tried changing the cut-off to 1 in order not to exclude anything and
> the method set to the
> function "decideTests" changed to "none" but it doesn't work.
> Could you recommend any other possible ways?
>
> I would appreciate any help,
>
> Daphne
>
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