[BioC] what metric is used to evalute the error rate?
Kevin R. Coombes
krc at mdacc.tmc.edu
Thu Nov 30 20:49:20 CET 2006
Shouldn't there be error bars (i.e., confidence intervals) around those
error estimates, that ought to get smaller when you use more samples?
Best,
Kevin
Weiwei Shi wrote:
> Hi, there:
>
> This is a question a little bit off topic but I believe many people
> using bioconductor might have this situation so I ask it here and hope
> I can get some suggestion.
>
> I have a result which looks like this:
> net num.genes overall.error overall.pred.error
> 1 custom 5 0.15625 0.05263
>
> The overall.error is (b+c)/(a+b+c+d) from cross-validation for
> training data; while the overall.pred.error is the one for test data.
> Since the sample sizes of training and test data are different, it
> gives me the result which performs better in test than training. I am
> wondering if there are some other metrics to evalute this
> classification error rate so that it can consider the effects of
> sample size.
>
> thanks
>
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