[BioC] GOstat

Naomi Altman naomi at stat.psu.edu
Mon Nov 27 15:51:40 CET 2006


I am starting to use GOstat, and there are several things I do not understand.

I managed to get output from HyperGTest.  I was able to view the 
enriched categories using htmlReport.

I would like to try out the graphing methods, but I have not been 
able to figure out the input.  In particular, I assume that since I 
have created a GOHyperGResult object, I should use

getGoGraph

but I have not figured out what goes into the goIds argument.  I 
presume it is some type of node identifier, but where do I find it?

Thanks for any assistance.

Naomi



Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
University Park, PA 16802-2111



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