[BioC] strange behavior with hsahomology

[Seth Falcon]

Nianhua Li <nli at fhcrc.org> writes:
> I can bet that you see the problem when and only when
> homoType=="m". Anyway, I have updated all the homology data packages
> (30 of them) in bioc 2.0 repository. The source packages and windows
> binaries in bioc 1.9 should be available before the end of the
> day.

Thanks, Nianhua, for the prompt fixes :-)

> Hope those codes are not confused any more. Now, seriously, do you
> know any packages that use those scores? I am curious about this
> because the source data that we used to generate hsahomology will be
> deprecated in Jan, 2007. 

As I understand it, the data is already deprecated and in Jan 2007 it
will be _defunct_, that is, no longer available.

> It is not easy to get those scores from the new data format. So, I
> am curious how heavily this data is being used. Thanks.

Yes, it would be nice to access how useful these are before putting a
lot of resources towards building them :-)

+ seth