[BioC] tasks of Background Correction and PM Correction in Preprocessing methods

[Alvord, Greg (DMS) [Contr]]

Mohammad - 

	A possible start is to acquire the excellent Springer book (2005) entitled "Bioinformatics and Computational Biology Solutions Using R and Bioconductor" with editors Gentlemen, Carey, Huber, Irizarry, and Dudoit. Chapter 2, 'Preprocessing High-density Oligonucleotide Arrays' addresses many aspects of this question that may interest you.

	Regards, Greg 

W. Gregory Alvord, Ph.D.
Director, Statistical Consulting Services
Computer and Statistical Services
National Cancer Institute at Frederick
Post Office Box B 
Frederick, MD 21702-1201
Phone: 301.846.5101
Facsimile: 301.846.6196
E-Mail gwa at css.ncifcrf.gov

 


-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Mohammad Esad-Djou
Sent: Tuesday, November 21, 2006 9:55 AM
To: bioconductor at stat.math.ethz.ch
Subject: [BioC] tasks of Background Correction and PM Correction in Preprocessing methods

Hello All,

I would like to separate tasks of Background Correction and PM Correction in Preprocessing methods. Unfortunately I do not find a uniform definition in literature. 

Sometimes are tasks of PM Correction and Background Correction similarly, e.g. Correction of Cross hybridisation.
 
Where and how can I clear (and correct!) Definition about it find?

Thanks,
Mohammad 


 
Interdisciplinary Centre for Bioinformatics
University of Leipzig 
Härtelstr. 16 - 18
D-04107 Leipzig

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