[BioC] error coercing an exprSet to ExpressionSet
Kimpel, Mark William
mkimpel at iupui.edu
Fri Nov 17 01:51:51 CET 2006
I have encountered an error when attempting to coerce an exprSet to an ExpressionSet. Below is my code, output, and sessionInfo(). What is the problem? Thanks, Mark
>isCurrent(eset, "exprSet")
R Biobase annotatedDataset exprSet
TRUE TRUE TRUE TRUE
>
> as(exprSet=eset,"ExpressionSet")
Error in as(exprSet = eset, "ExpressionSet") :
unused argument(s) (exprSet = <S4 object of class "exprSet">)
> sessionInfo()
R version 2.4.0 (2006-10-03)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] "splines" "stats" "graphics" "grDevices" "datasets" "utils" "methods" "tools" "base"
other attached packages:
rgu34acdf svMisc multtest affycoretools biomaRt RCurl XML GOstats Category genefilter survival
"1.14.0" "0.9-5" "1.12.0" "1.6.0" "1.8.0" "0.7-0" "0.99-93" "2.0.3" "2.0.3" "1.12.0" "2.29"
KEGG RBGL annotate GO graph RankProd RWinEdt limma affy affyio Biobase
"1.14.1" "1.10.0" "1.12.0" "1.14.1" "1.12.0" "2.6.0" "1.7-5" "2.9.1" "1.12.1" "1.2.0" "1.12.2"
>
Mark W. Kimpel MD
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Department of Psychiatry
Indiana University School of Medicine
PR M116
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