[BioC] promoter analysis

[Thomas Girke]

For motif discovery in promoter sequences you may want to take a look at the
cosmo package (not part of BioC yet?) at:

http://www.stat.berkeley.edu/~sandrine/software.html
or
http://cosmoweb.berkeley.edu/intro.html

Thomas

On Wed 11/08/06 10:55, Lakshmanan Iyer wrote:
> Hi Everyone
>  I am doing a time series microarray expression analysis using Bioconductor
> and it would be great if I could do the promter analysis also from within
> Bioconductor.
>  Has anyone worked with the TFBS BioPerl module to perfome promoter analysis
> on the promoters of clusters of genes?
> 
> 
> -Thanks
> -Lax
> Research Assistant Professor of Neuroscience
> Tufts University School of Medicine
> Boston
> MA 02111
> 
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> 
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Thomas Girke, Ph.D.
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