[BioC] GOstats and KEGG

[Seth Falcon]

Hi all,

"James W. MacDonald" <jmacdon at med.umich.edu> writes:
> Well, I didn't say you could summarize your results, just that you could 
> do the hyperGTest ;-D.
>
> The problem here is that htmlReport() calls summary(), which requires 
> that 'over_kegg' be a GOHyperGResult object. Unfortunately you don't 
> have one of those.
>
> I assume extending htmlReport() is on Seth's long TODO list, but for now 
> it only does GO stuff. However, I don't think it would be that difficult 
> for you to extend it yourself (or at least extend summary() so it will 
> ouput a data.frame that you can then output using write.table()).

Yes, this is on my TODO list and given that there is interest, it will
move closer to the top ;-)

Stay tuned.

+ seth