[BioC] hyperGTest and ath1121501-continued

Nianhua Li nli at fhcrc.org
Wed Nov 1 19:44:52 CET 2006


Dear Tine,
> I am still wondering about the following: the variable
> ath1121501ENTREZID is not defined in the ath1121501 environment, right? 
ath1121501ENTREZID is defined in the ath1121501 environment, but it is a
reference to ath1121501ACCNUM.
> Is in this case (for this arabidopsis-specific environment only)
> ath1121501ENTREZID identical to ath1121501ACCNUM?
Yes.
>
> I have build my own cdf and annotation package for this array, is the
> following correct:
>
> > Myath1annotENTREZID <- Myath1annotACCNUM
>
>
> in order to being able to use hyperGTest?
Yes if your annotation package was built by athPkgBuilder.

best

nianhua



More information about the Bioconductor mailing list