[BioC] hyperGTest and ath1121501-continued
Nianhua Li
nli at fhcrc.org
Wed Nov 1 19:44:52 CET 2006
Dear Tine,
> I am still wondering about the following: the variable
> ath1121501ENTREZID is not defined in the ath1121501 environment, right?
ath1121501ENTREZID is defined in the ath1121501 environment, but it is a
reference to ath1121501ACCNUM.
> Is in this case (for this arabidopsis-specific environment only)
> ath1121501ENTREZID identical to ath1121501ACCNUM?
Yes.
>
> I have build my own cdf and annotation package for this array, is the
> following correct:
>
> > Myath1annotENTREZID <- Myath1annotACCNUM
>
>
> in order to being able to use hyperGTest?
Yes if your annotation package was built by athPkgBuilder.
best
nianhua
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