[BioC] hyperGTest and ath1121501-continued
tineke.casneuf at ebi.ac.uk
Wed Nov 1 12:29:11 CET 2006
Dear Nianhua & list,
to continue the discussion on the hyperGTest and ath1121501
As far as I understood, this function needs the ENTREZID variable of the
studied environment, which in this case doesn't exist (~because we work
with the AGI-IDs and not the entrezIDs):
> hgOver <- hyperGTest(params)
Error in get(x, envir, mode, inherits) : variable "ath1121501ENTREZID"
of mode "environment" was not found
Did I completely miss it and is there a way around this problem or
should I look for another function, like Thomas Girke's GOHyperGAll?
Many thanks in advance,
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