[BioC] weights & normalizeBetweenArrays

[Jenny Drnevich]

Hello all,

It appears that normalizeWithinArrays by default takes the weights in an 
RGList into account when doing a normalization, but this does not appear to 
be an option for normalizeBetweenArrays. I am correct that currently 
normalizeBetweenArrays will use all the values equally for whichever norm 
method is chosen? If so, could this option be added in the future? I think 
I can hack the scale part of the code for my own purposes now...

Thanks,
Jenny


Jenny Drnevich, Ph.D.

Functional Genomics Bioinformatics Specialist
W.M. Keck Center for Comparative and Functional Genomics
Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign

330 ERML
1201 W. Gregory Dr.
Urbana, IL 61801
USA

ph: 217-244-7355
fax: 217-265-5066
e-mail: drnevich at uiuc.edu