[BioC] conflict between ROC and Hmisc or Design?

Shi, Tao shidaxia at yahoo.com
Tue Jan 31 20:30:16 CET 2006


Hi list, 
 
 I found that I can't load 'ROC' after 'Hmisc' or 'Design' have been loaded.  It works the other way around.  Do you know why?   From the error message, it seems the problem is in 'Biobase'....

thanks,

...Tao


> library(Hmisc)
Hmisc library by Frank E Harrell Jr

Type library(help='Hmisc'), ?Overview, or ?Hmisc.Overview')
to see overall documentation.

NOTE:Hmisc no longer redefines [.factor to drop unused levels when
subsetting.  To get the old behavior of Hmisc type dropUnusedLevels().

Attaching package: 'Hmisc'


        The following object(s) are masked from package:stats :

         ecdf 

> library(ROC)
Loading required package: Biobase
Loading required package: tools
Error in setMethod("contents", "environment", function(object, all.names) { : 
        no existing definition for function 'contents'
Error: .onLoad failed in 'loadNamespace' for 'Biobase'


==========================================
Another R session:
> library(ROC)
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor 
         Vignettes contain introductory material.  To view, 
         simply type: openVignette() 
         For details on reading vignettes, see
         the openVignette help page.
> package.version("ROC")
[1] "1.1.1"
> package.version("Hmisc")
[1] "3.0-7"
> package.version("Design")
[1] "2.0-12"
> package.version("Biobase")
[1] "1.5.12"
> R.Version()
$platform
[1] "i386-pc-mingw32"

$arch
[1] "i386"

$os
[1] "mingw32"

$system
[1] "i386, mingw32"

$status
[1] ""

$major
[1] "2"

$minor
[1] "1.1"

$year
[1] "2005"

$month
[1] "06"

$day
[1] "20"

$language
[1] "R"

>



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