[BioC] problems with GO package data

[Seth Falcon]

On 28 Jan 2006, yu-an.dong at bio.ifi.lmu.de wrote:

> Hi Ting-Yuan,
>
> I still get the same problem, e.g.
>
>> GOLOCUSID2GO[["4121"]]
> Fehler: rekursive Standardargument Referenz

What does traceback() say right after you get the error message?  

> The error message says: "Error: recursive standard argument
> reference".  Here's my session info:
>
>> sessionInfo()
> R version 2.2.0, 2005-10-06, i686-pc-linux-gnu
>
> attached base packages: [1] "splines" "tools" "methods" "stats"
> "graphics" "grDevices" [7] "utils" "datasets" "base"
>
> other attached packages: hgu95av2 GOstats multtest genefilter
> survival xtable RBGL "1.10.0" "1.4.0" "1.8.0" "1.8.0" "2.20" "1.3-0"
> "1.6.0" annotate Biobase GO graph Ruuid cluster "1.8.0" "1.8.0"
> "1.10.0" "1.8.0" "1.8.0" "1.10.2"

This looks relatively up-to-date.  There is a patch release of R
available and upgrading would not hurt (you will get many bug fixes).

> Any suggestions? Thanks!

One thing to try is to reinstall some/all of the packages.  I'm really
not sure what is happening.  As Ting reported, this isn't something
we've been able to reproduce.

+ seth