[BioC] Error while using AnnBuilder

[TEXTORIS Julien]

Hi, 

We are currently trying to develop a library to deal with nylon arrays.

I wanted to build an annotation package for our chip, but i have an error with 
GO. Here is the log :

$> mySrcUrls <- 
c(EG="ftp://ftp.ncbi.nih.gov/gene/DATA",UG="ftp://ftp.ncbi.nih.gov/repository/UniGene/Homo_sapiens/Hs.data.gz")
$> myBase <- "/home/jtextori/Documents/DEA/bioc/MC0311.txt.csv"
$> myBaseType <- "image"
$> myDir <-  tempdir()
$> ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = 
myBaseType, otherSrc = myOtherSrc, pkgName = "myPkg", pkgPath = myDir, 
organism = "Homo sapiens", version = "1.1.0", makeXML = FALSE, author = 
list(author = "Julien TEXTORIS", maintainer = "Julien.Textoris at gmail.com"), 
fromWeb = TRUE)
Erreur : impossible de trouver la fonction "ABPkgBuilder"
$> library(AnnBuilder)
Le chargement a nécessité le package : Biobase
Le chargement a nécessité le package : tools

Welcome to Bioconductor 

	Vignettes contain introductory material.
	To view, simply type 'openVignette()' or start with 'help(Biobase)'. 
	For details on reading vignettes, see the openVignette help page.

Le chargement a nécessité le package : XML
Le chargement a nécessité le package : annotate
$> ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = 
myBaseType, otherSrc = myOtherSrc, pkgName = "myPkg", pkgPath = myDir, 
organism = "Homo sapiens", version = "1.1.0", makeXML = FALSE, author = 
list(author = "Julien TEXTORIS", maintainer = "Julien.Textoris at gmail.com"), 
fromWeb = TRUE)
Erreur dans ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = 
myBaseType,  : 
	argument(s) inutilisé(s) (makeXML ...)
$> ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = 
myBaseType, , pkgName = "myPkg", pkgPath = myDir, organism = "Homo sapiens", 
version = "1.1.0", author = list(author = "Julien TEXTORIS", maintainer = 
"Julien.Textoris at gmail.com"), fromWeb = TRUE)

Attachement du package : 'GO'


	The following object(s) are masked from package:AnnBuilder :

	 GO 


Erreur dans all(is.na(annotation[, "GO"])) : indice hors limites
$>

The file is a text file with two columns, separated by a tabulation. First is 
the identifier from the chip, seond is the cloneId in the form IMAGE:nnnnn

I had the same error when i specified an URL for GO ?

What does it mean "The following object(s) are masked from 
package:AnnBuilder :" ?

Thanks in advance for any help,

Julien

PS, sessionInfo() follows :

> sessionInfo()
R version 2.2.1, 2005-12-20, i686-pc-linux-gnu 

attached base packages:
[1] "tools"     "methods"   "stats"     "graphics"  "grDevices" "utils"    
[7] "datasets"  "base"     

other attached packages:
        GO AnnBuilder   annotate        XML    Biobase 
  "1.10.0"    "1.8.0"    "1.8.0"   "0.99-6"    "1.8.0" 
>