[BioC] Problem with ljava when I run update.packages2

[Marcelo Luiz de Laia]

Hi Bioconductor Users!

I am doing a update in my librarys and I have this error message:

/usr/bin/ld: cannot find -ljava

The steps more complete are:

** libs
gcc -I/usr/lib/R/include -I/include -I/include/linux     -fPIC  -g -O2 
-c rmageml.c -o rmageml.o
gcc -shared  -o RMAGEML.so rmageml.o -L/jre/lib/i386 -ljava 
-L/jre/lib/i386/client -ljvm  -L/usr/lib/R/lib -lR
/usr/bin/ld: cannot find -ljava
collect2: ld returned 1 exit status
make: ** [RMAGEML.so] Erro 1
ERROR: compilation failed for package 'RMAGEML

But, I have the libjava installed:

root at lbmsala4b:/# ls -al /usr/lib/jre1.5.0/lib/i386/libj*
-rw-r--r--  1 root root  67848 2004-09-15 08:31 
/usr/lib/jre1.5.0/lib/i386/libj2pkcs11.so
-rwxr-xr-x  1 root root   5184 2004-09-15 09:13 
/usr/lib/jre1.5.0/lib/i386/libjaas_unix.so
-rwxr-xr-x  1 root root  22317 2004-09-15 08:37 
/usr/lib/jre1.5.0/lib/i386/libjava_crw_demo.so
-rwxr-xr-x  1 root root  77584 2004-09-15 09:46 
/usr/lib/jre1.5.0/lib/i386/libjavaplugin_jni.so
-rwxr-xr-x  1 root root 330648 2004-09-15 09:46 
/usr/lib/jre1.5.0/lib/i386/libjavaplugin_nscp_gcc29.so
-rwxr-xr-x  1 root root 268312 2004-09-15 09:46 
/usr/lib/jre1.5.0/lib/i386/libjavaplugin_nscp.so
-rwxr-xr-x  1 root root 140760 2004-09-15 08:34 
/usr/lib/jre1.5.0/lib/i386/libjava.so
-rwxr-xr-x  1 root root   3824 2004-09-15 09:10 
/usr/lib/jre1.5.0/lib/i386/libjawt.so
-rwxr-xr-x  1 root root 246407 2004-09-15 09:21 
/usr/lib/jre1.5.0/lib/i386/libjdwp.so
-rwxr-xr-x  1 root root 195104 2004-09-15 09:05 
/usr/lib/jre1.5.0/lib/i386/libjpeg.so
-rwxr-xr-x  1 root root   8343 2004-09-15 08:31 
/usr/lib/jre1.5.0/lib/i386/libjsig.so
-rwxr-xr-x  1 root root  66612 2004-09-15 08:44 
/usr/lib/jre1.5.0/lib/i386/libjsoundalsa.so
-rwxr-xr-x  1 root root 268428 2004-09-15 08:44 
/usr/lib/jre1.5.0/lib/i386/libjsound.so
root at lbmsala4b:/#

How I solve this one???

I use Debian testing.

Thanks in advanced.

-- 
Marcelo Luiz de Laia
Ph.D Student in Genetics and Plant Breeding
São Paulo State University (http://www.unesp.br/eng/)
School of Agricultural and Veterinary Sciences
Department of  Technology
Via de Acesso Prof.Paulo Donato Castellane s/n
14884-900   Jaboticabal - SP - Brazil
Fone: +55-016-3209-2675