[BioC] AnnBuilder built package not supported in R 2.2.0

[Brian Parker]

Hi,

Actually, I just wasn't installing the generated package properly using 
R CMD INSTALL (see my response to James MacDonald above) (...actually, 
that might be a useful newbie FAQ to add to the AnnBuilder vignette...).

The one remaining problem I have now is that I am finding that the KEGG 
site is unresponsive, and on most runs I get the following error message-
"
Warning message:
Built for UCSC is not valid! in: getUCSCBuilt(organism)
Error in parseKEGGGenome() : Faild to obtain KEGG organism code
"
Is there any simple workaround to skip the KEGG data?

BTW, thanks for the AnnBuilder function!
Brian Parker

John Zhang wrote:

>You will have to tell us a little bit more about what you have done. Did you 
>built the package and then had the package installed using R 2.2.0 or 2.2.1 or 
>built the package using R < 2.0.0 and tried to install the package using R > 
>2.0.0? 
>
>
>  
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>>Date: Thu, 23 Feb 2006 11:42:30 +1100
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>>Hi,
>>
>>I have tried generating an example annotation file using AnnBuilder 
>>following the example in the AnnBuilder vignette.
>>The example package "myPkg" appears to build OK, but when I try to use 
>>it I get the following error-
>>    
>>
>>>library(myPkg)
>>>      
>>>
>>Error in library(myPkg) : 'myPkg' is not a valid package -- installed < 
>>2.0.0?
>>
>>I have tried R 2.2.0 and 2.2.1 under Windows.
>>Any suggestions?
>>
>>Thanks,
>>Brian Parker
>>
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>
>Jianhua Zhang
>Department of Medical Oncology
>Dana-Farber Cancer Institute
>44 Binney Street
>Boston, MA 02115-6084
>
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