[BioC] limma anova table?

Gordon K Smyth smyth at wehi.EDU.AU
Tue Feb 21 05:06:16 CET 2006


What anova table do you want exactly?  lmFit() fits a linear model for each probe.  Do you want
55,000 anova tables if there are 55,000 probes?  That doesn't seem very useful to me!

Best wishes
Gordon

> Date: Tue, 07 Feb 2006 10:34:15 -0500
> From: Jianping Jin <jjin at email.unc.edu>
> Subject: [BioC] limma anova table?
> To: BioConductor_list <bioconductor at stat.math.ethz.ch>
> Message-ID: <C8B2BE8836479E5ED6585FDF at unc-jpjin.pmbb.med.unc.edu>
> Content-Type: text/plain; charset=us-ascii; format=flowed
>
> Dear limma developer and list:
>
> I am wondering if it is possible to extract something like anova table with
> group Pr. information etc. after "lmFit"?
>
> Thanks!
>
> Jianping
>
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