[BioC] Bioconductor installation problem

caiwei@mdanderson.org caiwei at mdanderson.org
Wed Feb 8 01:02:32 CET 2006


Dear list,

I am trying to install some of the Bioconductor packages using the
following code lines and get the warnings:


 source("http://www.bioconductor.org/biocLite.R")
biocLite()

Running bioCLite version 0.1  with R version  2.2.1

Warning message:
'CRAN.packages' is deprecated.
Use 'available.packages' instead.
See help("Deprecated")
Warning: unable to access index for repository
http://www.bioconductor.org/packages/bioc/devel/bin/windows/contrib/2.2
also installing the dependencies 'GO', 'KEGG', 'RColorBrewer'

trying URL
'http://www.bioconductor.org/packages/data/annotation/1.7/bin/windows/contrib/2.2/GO_1.10.0.zip'
Content type 'application/zip' length 14507935 bytes
opened URL
downloaded 14167Kb

............


Running biocinstall version 1.1  with R version  2.2.1
package 'geneplotter' successfully unpacked and MD5 sums checked
Warning: unable to move temporary installation 'C:\Program
Files\R\R-2.2.1\library\file767d7a5a\geneplotter' to 'C:
\PROGRA~1\R\R-22~1.1\library\geneplotter'
package 'hgu95av2' successfully unpacked and MD5 sums checked
package 'limma' successfully unpacked and MD5 sums checked
Warning: unable to move temporary installation 'C:\Program
Files\R\R-2.2.1\library\file1e1f3b25\limma' to 'C:
\PROGRA~1\R\R-22~1.1\library\limma'
package 'marray' successfully unpacked and MD5 sums checked
Warning: unable to move temporary installation 'C:\Program
Files\R\R-2.2.1\library\file1ad46e5d\marray' to 'C:
\PROGRA~1\R\R-22~1.1\library\marray'
package 'matchprobes' successfully unpacked and MD5 sums checked
package 'multtest' successfully unpacked and MD5 sums checked
Warning: unable to move temporary installation 'C:\Program
Files\R\R-2.2.1\library\file7ff57f96\multtest' to 'C:
\PROGRA~1\R\R-22~1.1\library\multtest'
package 'reposTools' successfully unpacked and MD5 sums checked
package 'ROC' successfully unpacked and MD5 sums checked
package 'vsn' successfully unpacked and MD5 sums checked
Warning: unable to move temporary installation 'C:\Program
Files\R\R-2.2.1\library\file30a6b89\vsn' to 'C:
\PROGRA~1\R\R-22~1.1\library\vsn'
package 'xtable' successfully unpacked and MD5 sums checked

I am running Windows XP and R 2. 2.1.

How can I fix the problem?

Thanks,

Caimiao



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