[BioC] problems when connecting to biomaRt database
Lina Hultin-Rosenberg
Lina.Hultin.Rosenberg at ebc.uu.se
Fri Dec 22 12:45:49 CET 2006
Dear all,
I have been using biomaRt to connect to ensembl and have previously done
that without any problems. Now when I tried again today I run into problems,
see code and error message below. I have also provided the output from
sessionInfo() below.
I would greatly appreciate some help with this, probably easily solved,
problem!
______________________________________________________________________
> library(biomaRt)
> ensembl = useMart("ensembl")
Error in validObject(.Object) : invalid class "Mart" object: invalid object
for slot "vschema" in class "Mart": got class "NULL", should be or extend
class "character"
> sessionInfo()
Version 2.3.1 (2006-06-01)
i686-pc-linux-gnu
attached base packages:
[1] "methods" "stats" "graphics" "grDevices" "utils" "datasets"
[7] "base"
other attached packages:
biomaRt RCurl XML
"1.6.3" "0.6-2" "0.99-8"
__________________________________________________________________________
Sincerely,
Lina Rosenberg
________________________________
Lina Hultin Rosenberg
Msc Molecular Biotechnology
Evolutionary Biology Department
Uppsala University
Norbyvägen 18
752 36 Uppsala
Phone: +46-18-4716444
Email: lina.hultin.rosenberg at ebc.uu.se
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