[BioC] Where do I find the golub_Train dataset?

[Furge, Kyle]

To add to the last post --

If memory serves, there was a name change between golubEsets 1.0.1 and the
more recent versions (1.2.4)

The current "Golub_Train" dataset (1.2.4) was named "golubTrain" in 1.0.1
package

I think the example will work if either a) get golubEsets 1.2.4 or b) use
the old name of "golubTrain"

-kyle


> From: Benjamin Otto <b.otto at uke.uni-hamburg.de>
> Date: Thu, 21 Dec 2006 14:14:46 +0100
> To: 'Seth Falcon' <sfalcon at fhcrc.org>, <bioconductor at stat.math.ethz.ch>
> Subject: Re: [BioC] Where do I find the golub_Train dataset?
> 
> Hi Seth, Hi Kyle,
> 
> I admitt I have written "golub_Train" in my mail. However that is NOT the
> problem! I used "Golub_Train" and certain other upper/lower case
> combinations before submitting to the bioclist without success. Besides, I
> tried to make a copy and paste of the example and the problem persists so
> it's not a typo. I do have the golubEsets package installed, I even made
> sure to have the newest version installed which is, according to my
> knowledge, version 1.0.1.
> 
> Here is my session info:
> 
> R version 2.4.0 (2006-10-03)
> i386-pc-mingw32 
> 
> locale:
> LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
> Kingdom.1252;LC_MONETARY=English_United
> Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
> 
> attached base packages:
> [1] "tools"     "grid"      "methods"   "stats"     "graphics"  "grDevices"
> [7] "utils"     "datasets"  "base"
> 
> other attached packages:
>     Biobase  golubEsets      hu6800 quantsmooth    quantreg     SparseM
>    "1.12.2"     "1.0.1"    "1.10.0"     "1.0.0"      "4.03"      "0.71"
>     lodplot      gplots       gdata      gtools
>       "1.0"     "2.3.1"     "2.1.1"     "2.1.1"
> 
> And THIS is the message I receive when submitting the command
> 
>> data(Golub_Train)
> Warning message:
> data set 'Golub_Train' not found in: data(Golub_Train)
> 
> 
> Any further suggestions? Thanks for your help. :-)
> 
> Regards,
> 
> Benjamin
> 
> 
> 
> -----Ursprüngliche Nachricht-----
> Von: bioconductor-bounces at stat.math.ethz.ch
> [mailto:bioconductor-bounces at stat.math.ethz.ch] Im Auftrag von Seth Falcon
> Gesendet: 19 December 2006 16:49
> An: bioconductor at stat.math.ethz.ch
> Betreff: Re: [BioC] Where do I find the golub_Train dataset?
> 
> "Benjamin Otto" <b.otto at uke.uni-hamburg.de> writes:
> 
>> Dear list members,
>> 
>> Where do I find the "golub_Train" dataset. It is used in the idiogram
>> package example however I neither can find it anywhere in the bioc
>> package or CRAN repositories nor does it seem to be part of the
>> golubEsets package.
> 
> If you read the example carefully, you will find:
> 
>     if(require(hu6800) && require(golubEsets)) {
>        library(golubEsets)
>        data(Golub_Train)
> 
> In any case, you want to install the golubEsets package.  You can do so
> using biocLite.
> 
> + seth
> 
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