[BioC] linkage analysis

[Theresa Scharl]

Hi,

I have Affymetrix 10k SNP data for 17 members of a family with a special 
disease (8 affected - 9 unaffected) and want to perform some kind of 
linkage or association analysis. The problem is that data is only 
available for about half the members of this family. There is only one 
person where the data of both father and mother is available.

Any suggestions on how to analyze this kind of data would be very much 
appreciated!

Best regards,
Theresa