[BioC] chip area distortion tolerance
Thalacker-Mercer, Anna E
athalack at purdue.edu
Mon Dec 11 19:38:29 CET 2006
I have a question in addition to your question about distortions. How
much should artifacts influence taking the chip out of the analysis? I
have several chips that have decent sized artifacts in them, but seem
fine when looking at the RLE and NUSE plots.
From: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of D.Enrique
Sent: Monday, December 11, 2006 11:27 AM
To: bioconductor at stat.math.ethz.ch
Subject: [BioC] chip area distortion tolerance
I am doing some QC for chips,
in the article of HEBER & SICK (2006),
they use a threshold of 20% of distortion of the area chip.
!) is there any consensus?
2) how do you estimate this %percentage of distortion in R?
Bioconductor mailing list
Bioconductor at stat.math.ethz.ch
Search the archives:
More information about the Bioconductor