[BioC] problems with gcrma just.gcrma

[Seth Falcon]

Hi Elisabetta,

Elisabetta Manduchi <manduchi at pcbi.upenn.edu> writes:
> I'm trying to use just.gcrma with data from Affy MGU74Av2 and am getting 
> the error at the bottom of what's copied below re read.probematrix. I'm 
> running version 2.4.0 of R and gcrma version 2.6.0. The mgu74av2 packages 
> being downloaded are version 1.14.0.
> Can anybody advice on what I can do to overcome this?

Could you provide the output of sessionInfo() from an R session where
the error has just occured?  

It is possible that you have a mixed set of package versions.  You
might want to try the following update recipe (from an R session):

source("http://bioconductor.org/biocLite.R")
biocLite("Biobase")
library("Biobase")
update.packages(repos=biocReposList())


+ seth