[BioC] athPkgBuilder

[Nianhua Li]

Good question, Tine,

Change pmid url to "Ontologies/Plant_Ontology/stru-060505.txt". FYI, this is the
script for building ath1121501 in the current release:

library(AnnBuilder)

ath1121501 <- function(pkgPath, version) {
    athPkgBuilder(baseName="ath1121501.GeneBankID",
                  pkgName="ath1121501",
                  pkgPath=pkgPath,
                  version=version,
                  author=list(
                    authors="Ting-Yuan Liu, ChenWei Lin, Seth Falcon, Jianhua
Zhang, James W. MacDonald",
                    maintainer="Biocore Data Team <biocannotation at lists.fhcrc.org>"
                    ),
                  fileExt = list(
                    estAssign = "Genes/est_mapping/est.Assignment.Locus",
                    seqGenes = "Genes/TAIR_sequenced_genes",
                    go = "Ontologies/Gene_Ontology/ATH_GO_GOSLIM.20060318.txt",
                    ##aliases = "Genes/gene_aliases.20041105",
                    aliases = "Genes/gene_aliases.20051208",
                    pathway = "Pathways/aracyc_dump_20060214",
                    ##pmid = "Ontologies/TAIR_Ontology/ATH_anatomy.20050119.txt")
                    pmid = "Ontologies/Plant_Ontology/stru-060309.txt")
                  )
}

hope it is helpful

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nianhua