[BioC] How use the function "normalizeWithinArrays" with loess in limma
sysra
sysra at laposte.net
Mon Apr 24 17:09:05 CEST 2006
Hey,
I'm french student and it's my first mail on bioconductor,
I just want to use the loess normalization on my data, but i
don't understand which type of data the function
"normaliseWithinArrays" want. And, if i must apply the
function log, before or after normalisation.
So i'm a little lost.
(no log) (no background) (raw data)
my data profile :
dat$R dat$G
49 35
118 34
29 101.5
42 46.5
44 287.5
31 174
my script :
MA <- normalizeWithinArrays(don, method="loess")
thinks,
Sylvain
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