[BioC] Wilcoxon rank sum test on Golub dataset
Andrej Kastrin
andrej.kastrin at siol.net
Thu Apr 20 11:52:17 CEST 2006
Dear BioC useRs,
I'm working on classical Golub dataset and I would like to select 10
genes that are mostly overexpressed in AML, and 10 genes that are mostly
overexpressed in ALL by using Wilcoxon rank sums test.
I try with the below code (I paste just the core of the loop) which
compute p value for each row, but the result is identical:
wilcox.AML.pvals[i] <- wilcox.test(aml.i,all.i)$p.value
wilcox.ALL.pvals[i] <- wilcox.test(all.i,aml.i)$p.value
Thanks in advance for any suggestion,
Andrej
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